PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006949
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 236aa    MW: 25718.5 Da    PI: 5.3313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006949genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-3170128259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
  DCAR_006949  70 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 128
                  79************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-3158130IPR003657WRKY domain
PROSITE profilePS5081135.15264130IPR003657WRKY domain
SuperFamilySSF1182909.42E-2766130IPR003657WRKY domain
SMARTSM007741.5E-3669129IPR003657WRKY domain
PfamPF031062.9E-2671128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDDDWDLYAV VRSCTAAAAA GKSTLSATPS QPMWNNPITS PPFRVQENEH SARKNQMKRV  60
CHVPSEGLSS DMWSWRKYGQ KPIKGSPYPR GYYRCSTSKG CLARKQVERN RSDPTMFIVT  120
YTAEHNHPVP THRNSLAGST RQKVSSSEGV SDGDPNKPTC STPISPAASL SPAPEKCEIG  180
EEDEELWASD TPLSDDFFMG LEDIEMPAAG DGEMDHFPMF PWTGNNATTT AAGGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-18681301677Probable WRKY transcription factor 4
2lex_A2e-18681301677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061786.15e-81PREDICTED: WRKY transcription factor 22-like
SwissprotO046094e-66WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A142CCY42e-79A0A142CCY4_9LAMI; WRKY transcription factor
STRINGSolyc01g095100.2.14e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-64WRKY family protein